HistomicsTK serves both as a standalone Python toolkit and as a web-based platform, developed as a server-side Girder plugin, for the analysis of whole-slide histopathology images in association with clinical and genomic data.
Some handy links for HistomicsTK and related tools:
- Source code via Github
- Documentation via ReadTheDocs
- Blog post with a brief description of HistomicsTK and related tools
- Demo instance of DigitalSlideArchive - a Girder extension for management of histopathology data
- Demo instance of HistomicsTK’s interface for web-based analysis
- Chat room via Gitter