When I am trying to call the (https://candygram.neurology.emory.edu:8080/api/v1) I face a timeout error for the histomicsTK package, has anyone faced this issue?
the complete code is below
APIURL = ‘https://candygram.neurology.emory.edu:8080/api/v1/’
SAMPLE_SLIDE_ID = “5bbdeb97e629140048d017ba”
gc = girder_client.GirderClient(apiUrl=APIURL)
gc.authenticate(apiKey=‘REDACTED_SECRET’)
gc.authenticate(apiKey=‘REDACTED_SECRET’)
This is where the run logs will be saved
logging_savepath = tempfile.mkdtemp()
color normalization values from TCGA-A2-A3XS-DX1
cnorm_thumbnail = {
‘mu’: np.array([9.24496373, -0.00966569, 0.01757247]),
‘sigma’: np.array([0.35686209, 0.02566772, 0.02500282]),
}
from the ROI in Amgad et al, 2019
cnorm_main = {
‘mu’: np.array([8.74108109, -0.12440419, 0.0444982]),
‘sigma’: np.array([0.6135447, 0.10989545, 0.0286032]),
}```